CV

Education

Postdoctoral Associate, Department of Biomedical Informatics, University of Pittsburgh，August 2021 – Present
- PI: Dr. Hatice Ulku Osmanbeyoglu
Graduate Student Researcher (GSR), Department of Biomedical Informatics, University of Pittsburgh，August 2015 – July 2021
- PI: Dr. Xiaosong Wang

Integrative bioinformatics & Biostatistics
Machine Learning and Deep Learning
WGS, WXS, and RNAseq analysis
Solid skills in R, Perl, and Shell
Solid skills in High Performance Computing
Experienced with genomic data sources such as NCBI GEO, SRA, and dbGaP, GDC, ICGC, EGA, COSMIC, CCLE, GDSC, GTEx, Metabric

Gradaute student, University of Pittsburgh, May 2017 – July 2021
- Integral multi-omics modeling to predict breast cancer patient response to HER2-targeted therapy
- Landscape analysis of adjacent gene rearrangements reveals BCL2L14-ETV6 gene fusions in more aggressive triple-negative breast cancer
- Concept Signature Enrichment Analysis: a novel pathway enrichment analysis method for interpreting complex pathway alterations and for single cell sequencing datasets
Graduate student, University of Pittsburgh, August 2015 – May 2017
- An algorithm for direct causal learning of influences on patient outcomes
- Modeling miRNA-mRNA interactions that cause phenotypic abnormality in breast cancer patients
Lab Technician, University of Utah, October 2012 – April 2015
- Identification of master regulators that regulate White or Brown Adipose Tissue (WAT or BAT) differentiation
Research volunteer, University of Utah, November 2011 – January 2013
- Robust meta-analysis shows that glioma transcriptional subtyping complements traditional approaches
Research Coordinator, VA Health Center, January 2010 – December 2011
- Center for Health Information and Research (CHIR) Information Extraction Methods and Ejection Fraction

The 2nd Best publication of the year in the department of Biomedical Informatics, August 2018 and August 2020